SubtiBank SubtiBank
Version comparison:

2017-8-11 16:0:3Tue Dec 13 2016 11:16:37 GMT+0100 (CET)

_ec

proteinLength

659

geneLength

1977

Gene

Coordinates

4,163,643 → 4,165,622

Gene

Phenotypes of a mutant

inactivation of ''[[gene|gdpP]]'' strongly restores beta-lactam resistance in a ''[[gene|sigM]]'' mutant [Pubmed|22211522]

a ''[[gene|gdpP]] [[gene|pgpH]]'' double mutant acquires suppressor mutations in ''[[gene|cdaA]]'' [Pubmed|26240071]

a ''[[gene|gdpP]] [[gene|pgpH]]'' double mutant is defective in [SW|biofilm formation] [Pubmed|27252699]

inactivation of ''[[protein|gdpP]]'' strongly restores beta-lactam resistance in a ''[[protein|sigM]]'' mutant [Pubmed|22211522]

a ''[SW|gdpP] [SW|pgpH]'' double mutant acquires suppressor mutations in ''[SW|cdaA]'' [Pubmed|26240071]

a ''[SW|gdpP] [SW|pgpH]'' double mutant is defective in [SW|biofilm formation] [Pubmed|27252699]

The protein

Catalyzed reaction/ biological activity

cyclic dinucleotide phosphodiesterase, hydrolysis of cyclic di-AMP [Pubmed|19901023]

cyclic dinucleotide phosphodiesterase, hydrolysis of di-cyclic AMP [Pubmed|19901023]

Expression and Regulation

Operons

[[this]]

Expression and Regulation

Other regulations

[[this]]

Biological materials

Mutant

MGNA-B834 (yybT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1833 NBRP B. subtilis, Japan]

GP998 (''[[gene|gdpP]]''::''spc''), available in [SW|Jörg Stülke]'s lab [Pubmed|23192352]

GP2040 (''[[gene|gdpP]]''::''spc'' ''[[gene|pgpH]]''::''erm'' without terminator, available in [SW|Jörg Stülke]'s lab) [Pubmed|26240071]

GP998 (''[[protein|gdpP]]''::''spc''), available in [SW|Jörg Stülke]'s lab [Pubmed|23192352]

GP2040 (''[[protein|gdpP]]''::''spc'' ''[[protein|pgpH]]''::''erm'' without terminator, available in [SW|Jörg Stülke]'s lab) [Pubmed|26240071]

ec

aminos

MPSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQEIDAYISTLSYRLKKVGEEALMEMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDTCESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDVTEQIQIEKLYENERTVLAYIFLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELENSKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKLPNGKVKFYGGKTNPMEKRTRVRARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGILKVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRFITPEEAMEISNDDTLLVIVDTHKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPKRLKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYIKRAKLIQHTVLYKDNIAIASLPENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQTVCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSEALERLKHAIDEYFEGGVQR

[SW|Categories] containing this gene/protein

[SW|metabolism of signalling nucleotides], [SW|membrane proteins]

Gene

Coordinates on the chromosome (coding sequence)

4,163,643 -> 4,165,622

Expression and Regulation

Operon

''[[protein|yybS]]-[[protein|gdpP]]-[[protein|rplI]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yybST-rplI.html DBTBS])

Expression and Regulation

Additional information

there is an internal [[protein|SigD]]-dependent antisense transcript (as-'[[protein|gdpP]]') [PubMed|22956758]